Report for cDNA subcluster: 2

of cluster: 48 (annotdb_asmbl_id:68711 coords:8897-12222)

Subcluster view.

Assembly description

assembly cdnas annotations linked status comment

asmbl_3

gene: 68711.t00007
model: model.68711.m00007 AllGeneUpdates

8. incompatible fl-cdna assembly alignment updates gene structure.

Passed validation test. Aligns with 91.216 % ID across 94.468085106383 % of the shorter protein length. -Should update non-compatible gene with available fl-cDNA.
Applied to 68711.t00007,model.68711.m00007

>asmbl_3-based protein
MASRKLVRDLLITKQPLLQQLVHQRRVGARLGLLQGNGFASHRRFSVFSEFSKKIRGEAD
SNPEFQKTVKEFKERAEELQGVKEDLKVRTKQTTEKLYKQGQGVWTEAESVAKKVSSSVK
DKFSAATEEVKESFKLGKEESAESASSSGTGTTEGEKQQQQSGSTEEQDTFFGKFKSSIS
SPKLSEAFHKPLDFAKKGLDIVKDELRGNPSKRKHLEYTPPPPFTGERSTRTEMVIMPTK
QSKWQKKWESLREKMQGYPVFKRLSGMSEPVVNKSQEIAEDVREKWETSDNPIVHKIQDM
NERIFEETGSASTYKEIRRRDPSFSLPDFVSEIQEAIRPVLNAYSKGDAKTLKKYCSKEL
IERCTAEHRAFTSQGYFFDHKLLHVSEVDIQETKMMGTTPVIIVRFQTQEIFCVRDQDGK
IKEGGQDTIHTVYYDWAMQQVDAAELGEDAIYPIWRLREMLRAGVQALI*

cDNA information

cDNA acc	alignment program	spliced orientation	Seq Length	Full-length status	Title
gi\|59846715\|gb\|BP810636.1\|BP810636	gmap	+	390	0	gi\|59846715\|gb\|BP810636.1\|BP810636 BP810636 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-26-N16 5', mRNA sequence
gi\|59846715\|gb\|BP810636.1\|BP810636		avg_per_id: 96.7538461538462	percent_aligned: 100	Alignment: orient(a+/s+) align: 8959(1)-9207(248)>GT....AG<9290(249)-9396(356)>GT....AG<9477(357)-9511(390)
gi\|48990638\|gb\|BP574872.1\|BP574872	gmap	+	371	0	gi\|48990638\|gb\|BP574872.1\|BP574872 BP574872 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-89-N14 3', mRNA sequence
gi\|48990638\|gb\|BP574872.1\|BP574872		avg_per_id: 96.8227146814404	percent_aligned: 97.3045822102426	Alignment: orient(a-/s+) align: 11626(361)-11689(298)>GT....AG<11778(297)-12075(1)
gi\|59906223\|gb\|BP845250.1\|BP845250	gmap	+	391	0	gi\|59906223\|gb\|BP845250.1\|BP845250 BP845250 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-93-A19 5', mRNA sequence
gi\|59906223\|gb\|BP845250.1\|BP845250		avg_per_id: 99.7157894736842	percent_aligned: 97.1867007672634	Alignment: orient(a+/s+) align: 8959(1)-9207(249)>GT....AG<9290(250)-9396(357)>GT....AG<9477(358)-9499(380)
gi\|19875340\|gb\|AU236171.1\|AU236171	gmap	+	375	0	gi\|19875340\|gb\|AU236171.1\|AU236171 AU236171 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-73-I09 5', mRNA sequence
gi\|19875340\|gb\|AU236171.1\|AU236171		avg_per_id: 99.44	percent_aligned: 100	Alignment: orient(a+/s+) align: 8938(1)-9207(270)>GT....AG<9290(271)-9392(375)
gi\|49231624\|gb\|BP601380.1\|BP601380	gmap	?	434	0	gi\|49231624\|gb\|BP601380.1\|BP601380 BP601380 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-49-M08 3', mRNA sequence
gi\|49231624\|gb\|BP601380.1\|BP601380		avg_per_id: 100	percent_aligned: 100	Alignment: orient(a-/s?) align: 11789(434)-12222(1)
gi\|86066808\|gb\|DR362565.1\|DR362565	gmap	+	362	0	gi\|86066808\|gb\|DR362565.1\|DR362565 6628664 CERES-AL45 Arabidopsis thaliana cDNA clone 1192839 5', mRNA sequence
gi\|86066808\|gb\|DR362565.1\|DR362565		avg_per_id: 99	percent_aligned: 98.3425414364641	Alignment: orient(a+/s+) align: 8956(7)-9207(258)>GT....AG<9290(259)-9393(362)
gi\|86087708\|gb\|DR383467.1\|DR383467	gmap	+	619	0	gi\|86087708\|gb\|DR383467.1\|DR383467 13801692 CERES-AL45 Arabidopsis thaliana cDNA clone 1192839 3', mRNA sequence
gi\|86087708\|gb\|DR383467.1\|DR383467		avg_per_id: 97.1922455573506	percent_aligned: 100	Alignment: orient(a+/s+) align: 11273(1)-11353(81)>GT....AG<11471(82)-11542(153)>GT....AG<11627(154)-11689(216)>GT....AG<11778(217)-12192(619)
gi\|59793247\|gb\|BP797053.1\|BP797053	gmap	+	388	0	gi\|59793247\|gb\|BP797053.1\|BP797053 BP797053 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-01-O20 5', mRNA sequence
gi\|59793247\|gb\|BP797053.1\|BP797053		avg_per_id: 98	percent_aligned: 97.1649484536082	Alignment: orient(a+/s+) align: 8939(1)-9207(271)>GT....AG<9290(272)-9396(377)
gi\|86066807\|gb\|DR362564.1\|DR362564	gmap	+	471	0	gi\|86066807\|gb\|DR362564.1\|DR362564 5737251 CERES-AL46 Arabidopsis thaliana cDNA clone 1144811 5', mRNA sequence
gi\|86066807\|gb\|DR362564.1\|DR362564		avg_per_id: 99.2521739130435	percent_aligned: 97.6645435244161	Alignment: orient(a+/s+) align: 8958(2)-9207(251)>GT....AG<9290(252)-9396(358)>GT....AG<9477(359)-9560(444)>GT....AG<9655(445)-9671(461)
gi\|53828526\|gb\|BT015810.1\|	gmap	+	1785	1	gi\|53828526\|gb\|BT015810.1\| Arabidopsis thaliana At2g36070 gene, complete cds
gi\|53828526\|gb\|BT015810.1\|		avg_per_id: 99.5675070028011	percent_aligned: 100	Alignment: orient(a+/s+) align: 9023(1)-9207(185)>GT....AG<9290(186)-9396(292)>GT....AG<9477(293)-9560(376)>GT....AG<9655(377)-9730(452)>GT....AG<10021(453)-10065(497)>GT....AG<10165(498)-10539(872)>GT....AG<10620(873)-10688(941)>GT....AG<10800(942)-10864(1006)>GT....AG<10953(1007)-11021(1075)>GT....AG<11096(1076)-11168(1148)>GT....AG<11249(1149)-11353(1253)>GT....AG<11471(1254)-11542(1325)>GT....AG<11627(1326)-11689(1388)>GT....AG<11778(1389)-12172(1785)
gi\|59791635\|gb\|BP796201.1\|BP796201	gmap	+	670	0	gi\|59791635\|gb\|BP796201.1\|BP796201 BP796201 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-15-A19 5', mRNA sequence
gi\|59791635\|gb\|BP796201.1\|BP796201		avg_per_id: 99.2035928143713	percent_aligned: 99.7014925373134	Alignment: orient(a+/s+) align: 8897(2)-9207(313)>GT....AG<9290(314)-9396(420)>GT....AG<9477(421)-9560(504)>GT....AG<9655(505)-9730(580)>GT....AG<10021(581)-10065(625)>GT....AG<10165(626)-10209(669)
gi\|49031483\|gb\|BP582273.1\|BP582273	gmap	+	383	0	gi\|49031483\|gb\|BP582273.1\|BP582273 BP582273 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-35-I09 3', mRNA sequence
gi\|49031483\|gb\|BP582273.1\|BP582273		avg_per_id: 96.5404699738903	percent_aligned: 100	Alignment: orient(a-/s+) align: 11519(383)-11542(360)>GT....AG<11627(359)-11689(298)>GT....AG<11778(297)-12075(1)
gi\|48989496\|gb\|BP573730.1\|BP573730	gmap	+	369	0	gi\|48989496\|gb\|BP573730.1\|BP573730 BP573730 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-85-G16 3', mRNA sequence
gi\|48989496\|gb\|BP573730.1\|BP573730		avg_per_id: 98.353591160221	percent_aligned: 98.1029810298103	Alignment: orient(a-/s+) align: 11626(362)-11689(299)>GT....AG<11778(298)-12075(1)